Index

_

__init__() (micromet.AmerifluxDataProcessor method), [1] (micromet.format.reformatter.Reformatter method) (micromet.pipeline.Pipeline method) (micromet.reader.AmerifluxDataProcessor method) (micromet.Reformatter method), [1] (micromet.station_data_pull.StationDataDownloader method), [1] (micromet.station_data_pull.StationDataProcessor method), [1] (micromet.StationDataDownloader method), [1] (micromet.StationDataProcessor method), [1]

A

add_ameriflux_timestamps() (in module micromet.format.transformers.timestamps) add_buffer() (in module micromet.qaqc.netrad_limits) adjust_wd() (in module micromet.qaqc.data_cleaning) adjust_wind_direction() (in module micromet.qaqc.data_cleaning) aggregate_to_daily_centroid() (in module micromet.report.tools) align() (in module micromet.format.compare) AmerifluxDataProcessor (class in micromet), [1] (class in micromet.reader) amflux_var_file (micromet.WorkflowConfig attribute), [1]

analyze_timestamp_alignment() (in module micromet.qaqc.netrad_limits) apply_fixes() (in module micromet.format.transformers) (in module micromet.format.transformers.corrections) apply_header() (in module micromet.format.headers) (in module micromet.headers) apply_internal_flags() (in module micromet.qaqc.data_cleaning) apply_lag_shift() (in module micromet.qaqc.data_cleaning) apply_limits_to_vars() (in module micromet.report.fix_g_values) apply_physical_limits() (in module micromet.format.transformers) (in module micromet.format.transformers.validation)

B

batch_process() (in module micromet.pipeline) (micromet.pipeline.Pipeline method)

bland_alt_plot() (in module micromet.report.graphs)

C

calc_mean_value_for_soil() (in module micromet.report.fix_g_values) calculate_new_g_value() (in module micromet.report.fix_g_values) check_timestamps (micromet.format.reformatter.Reformatter attribute) (micromet.pipeline.PipelineConfig attribute), [1] (micromet.Reformatter attribute), [1] clean_extreme_variations() (in module micromet.report.tools) clear_sky_radiation() (in module micromet.qaqc.netrad_limits) co2_flag_windows (micromet.SiteCorrections attribute), [1] coef (micromet.format.compare.FitResult attribute) col_order() (in module micromet.format.transformers) (in module micromet.format.transformers.columns) column (micromet.DateRangeDrop attribute), [1] columns_to_drop_from_merge (micromet.SiteCorrections attribute), [1] comp_pot (micromet.qaqc.netrad_limits.WindowComposite attribute), [1] comp_ppfd (micromet.qaqc.netrad_limits.WindowComposite attribute), [1] comp_sw (micromet.qaqc.netrad_limits.WindowComposite attribute), [1] compare_and_plot() (in module micromet.format.compare) compare_gap_summaries() (in module micromet.report.gap_summary) compare_names_to_ameriflux() (in module micromet.report.validate) compare_report() (in module micromet.format.compare)

compare_sql_to_station() (micromet.station_data_pull.StationDataProcessor method), [1] (micromet.StationDataProcessor method), [1] compare_to_raw() (in module micromet.report.validate) compare_to_sig_strength() (in module micromet.report.eddy_plots) comparison_plot() (in module micromet.report.eddy_plots) compile_files() (in module micromet.format.file_compile) compute_Cw() (in module micromet.report.tools) config (micromet.format.reformatter.Reformatter attribute) (micromet.pipeline.Pipeline attribute) (micromet.Reformatter attribute), [1] (micromet.station_data_pull.StationDataDownloader attribute), [1] (micromet.StationDataDownloader attribute), [1] corr_ppfd (micromet.qaqc.netrad_limits.WindowComposite attribute), [1] corr_sw (micromet.qaqc.netrad_limits.WindowComposite attribute), [1] correct_vars_by_factor() (in module micromet.report.fix_g_values) count_columns() (in module micromet.format.headers) (in module micromet.headers) create_grouped_boxplot() (in module micromet.report.eddy_plots) create_reformatter_from_site() (in module micromet.utils) create_ts (micromet.format.file_compile.FileInfo attribute), [1] csflux_join_cols (micromet.SiteCorrections attribute), [1]

D

data_diff_check() (in module micromet.report.validate) data_interval_label (micromet.WorkflowConfig attribute), [1] database_columns() (micromet.station_data_pull.StationDataProcessor method), [1] (micromet.StationDataProcessor method), [1] date_range_drops (micromet.SiteCorrections attribute), [1] DateRangeDrop (class in micromet), [1] despike_data_nan_aware() (in module micromet.qaqc.data_cleaning) detect_delimiter_and_header() (in module micromet.format.headers) (in module micromet.headers) detect_extreme_variations() (in module micromet.report.tools) detect_sectional_offsets_indexed() (in module micromet.report.validate)

download_from_station() (micromet.station_data_pull.StationDataDownloader method), [1] (micromet.StationDataDownloader method), [1] drop_extra_soil_columns() (in module micromet.format.transformers) (in module micromet.format.transformers.cleanup) drop_extras() (in module micromet.format.transformers) (in module micromet.format.transformers.cleanup) drop_precip_on_visits (micromet.SiteCorrections attribute), [1] drop_soil (micromet.format.reformatter.Reformatter attribute) (micromet.pipeline.PipelineConfig attribute), [1] (micromet.Reformatter attribute), [1] (micromet.WorkflowConfig attribute), [1]

E

end (micromet.DateRangeDrop attribute), [1] (micromet.FlagWindow attribute), [1] energy_sankey() (in module micromet.report.graphs) engine (micromet.station_data_pull.StationDataProcessor attribute), [1] (micromet.StationDataProcessor attribute), [1] error_message (micromet.pipeline.ProcessingResult attribute), [1]

errors (micromet.WorkflowResult attribute), [1] estimate_net_radiation_range() (in module micromet.qaqc.netrad_limits) events_api_url (micromet.WorkflowConfig attribute), [1] expected_freq (micromet.pipeline.PipelineConfig attribute), [1] extra_drops (micromet.SiteCorrections attribute), [1] extract_config_for_reformatter() (in module micromet.utils)

F

fetch_events_from_db (micromet.WorkflowConfig attribute), [1] FileInfo (class in micromet.format.file_compile) fill_na_drop_dups() (in module micromet.format.transformers) (in module micromet.format.transformers.corrections) fillna_with_second_df() (in module micromet.format.merge) filter_near_neutral() (in module micromet.report.tools) finalize() (micromet.format.reformatter.Reformatter method) (micromet.Reformatter method), [1] find_gaps() (in module micromet.report.tools) find_header_donor() (in module micromet.format.headers) (in module micromet.headers) find_irr_dates() (in module micromet.report.tools) find_optimal_shift() (in module micromet.qaqc.data_cleaning) find_zero_chunks() (in module micromet.report.validate)

fit_linear() (in module micromet.format.compare) FitResult (class in micromet.format.compare) fix_all_in_parent() (in module micromet.format.headers) (in module micromet.headers) fix_directory_pairs() (in module micromet.format.headers) (in module micromet.headers) fix_swc_percent() (in module micromet.format.transformers) (in module micromet.format.transformers.corrections) fix_timestamps() (in module micromet.format.transformers) (in module micromet.format.transformers.timestamps) flag_columns (micromet.FlagWindow attribute), [1] flag_issues() (in module micromet.qaqc.netrad_limits) flag_value (micromet.FlagWindow attribute), [1] FlagWindow (class in micromet), [1]

G

generate_plots (micromet.pipeline.PipelineConfig attribute), [1] (micromet.WorkflowConfig attribute), [1] generate_reports (micromet.pipeline.PipelineConfig attribute), [1] generate_review_plots() (micromet.WorkflowRunner method), [1] get_all_site_configs() (in module micromet.utils) get_first_line_raw() (in module micromet.format.headers) (in module micromet.headers)

get_max_date() (micromet.station_data_pull.StationDataProcessor method), [1] (micromet.StationDataProcessor method), [1] get_station_data() (micromet.station_data_pull.StationDataProcessor method), [1] (micromet.StationDataProcessor method), [1] get_station_id() (micromet.station_data_pull.StationDataDownloader static method), [1] (micromet.StationDataDownloader static method), [1] get_times() (micromet.station_data_pull.StationDataDownloader method), [1] (micromet.StationDataDownloader method), [1]

H

h2o_flag_windows (micromet.SiteCorrections attribute), [1] header_line_is_valid() (in module micromet.format.headers) (in module micromet.headers)

hour_angle() (in module micromet.qaqc.netrad_limits)

I

impute_missing_values() (in module micromet.qaqc.data_cleaning) infer_datetime_col() (in module micromet.format.transformers) (in module micromet.format.transformers.timestamps) input_file (micromet.pipeline.ProcessingResult attribute), [1]

intercept (micromet.format.compare.FitResult attribute) interval (micromet.WorkflowConfig attribute), [1] iterate_through_stations() (micromet.AmerifluxDataProcessor method), [1] (micromet.reader.AmerifluxDataProcessor method)

L

lag_ppfd (micromet.qaqc.netrad_limits.WindowComposite attribute), [1] lag_sw (micromet.qaqc.netrad_limits.WindowComposite attribute), [1] load_yaml() (in module micromet.utils) logger (micromet.AmerifluxDataProcessor attribute), [1] (micromet.format.reformatter.Reformatter attribute) (micromet.pipeline.Pipeline attribute) (micromet.reader.AmerifluxDataProcessor attribute) (micromet.Reformatter attribute), [1] (micromet.station_data_pull.StationDataDownloader attribute), [1] (micromet.StationDataDownloader attribute), [1]

logger_check() (in module micromet.utils) logger_credentials (micromet.station_data_pull.StationDataDownloader attribute), [1] (micromet.StationDataDownloader attribute), [1] longwave_radiation() (in module micromet.qaqc.netrad_limits) looks_like_header() (in module micromet.format.headers) (in module micromet.headers)

M

main() (in module micromet.pipeline) make_unique() (in module micromet.format.transformers) (in module micromet.format.transformers.columns) make_unique_cols() (in module micromet.format.transformers) (in module micromet.format.transformers.columns) mask_by_rolling_window_combined() (in module micromet.qaqc.data_cleaning) mask_stuck_values() (in module micromet.format.transformers) (in module micromet.format.transformers.validation) mask_wind_direction() (in module micromet.qaqc.data_cleaning) mean_diff_plot() (in module micromet.report.graphs) mean_squared_error() (in module micromet.report.graphs) micromet module, [1] micromet.format module micromet.format.compare module micromet.format.file_compile module micromet.format.headers module micromet.format.merge module micromet.format.reformatter module micromet.format.reformatter_vars module micromet.format.transformers module micromet.format.transformers.cleanup module micromet.format.transformers.columns module micromet.format.transformers.corrections module micromet.format.transformers.interval_updates module micromet.format.transformers.timestamp_update module micromet.format.transformers.timestamps module micromet.format.transformers.validation module micromet.graphs module micromet.headers module micromet.pipeline module micromet.qaqc module micromet.qaqc.data_cleaning module micromet.qaqc.netrad_limits module micromet.qaqc.variable_limits module micromet.reader module micromet.report module

micromet.report.eddy_plots module micromet.report.fix_g_values module micromet.report.gap_summary module micromet.report.graphs module micromet.report.recalculate_albedo module micromet.report.tools module micromet.report.validate module micromet.station_data_pull module, [1] micromet.station_info module micromet.tools module micromet.utils module modernize_soil_legacy() (in module micromet.format.transformers) (in module micromet.format.transformers.columns) module micromet, [1] micromet.format micromet.format.compare micromet.format.file_compile micromet.format.headers micromet.format.merge micromet.format.reformatter micromet.format.reformatter_vars micromet.format.transformers micromet.format.transformers.cleanup micromet.format.transformers.columns micromet.format.transformers.corrections micromet.format.transformers.interval_updates micromet.format.transformers.timestamp_update micromet.format.transformers.timestamps micromet.format.transformers.validation micromet.graphs micromet.headers micromet.pipeline micromet.qaqc micromet.qaqc.data_cleaning micromet.qaqc.netrad_limits micromet.qaqc.variable_limits micromet.reader micromet.report micromet.report.eddy_plots micromet.report.fix_g_values micromet.report.gap_summary micromet.report.graphs micromet.report.recalculate_albedo micromet.report.tools micromet.report.validate micromet.station_data_pull, [1] micromet.station_info micromet.tools micromet.utils mtime_ts (micromet.format.file_compile.FileInfo attribute), [1]

N

n_flagged (micromet.pipeline.ProcessingResult attribute), [1] n_records_input (micromet.pipeline.ProcessingResult attribute), [1] n_records_output (micromet.pipeline.ProcessingResult attribute), [1] NA_VALUES (micromet.AmerifluxDataProcessor attribute), [1] (micromet.reader.AmerifluxDataProcessor attribute)

name_similarity() (in module micromet.format.headers) (in module micromet.headers) names (micromet.AmerifluxDataProcessor attribute), [1] (micromet.reader.AmerifluxDataProcessor attribute) normalize_prefixes() (in module micromet.format.transformers) (in module micromet.format.transformers.columns)

O

ols_plot() (in module micromet.report.eddy_plots) open_text() (in module micromet.format.headers) (in module micromet.headers) outlier_mask_from_residuals() (in module micromet.format.compare)

output_file (micromet.pipeline.ProcessingResult attribute), [1] output_files (micromet.WorkflowResult attribute), [1] output_format (micromet.pipeline.PipelineConfig attribute), [1] output_root (micromet.WorkflowConfig attribute), [1]

P

patch_file() (in module micromet.format.headers) (in module micromet.headers) path (micromet.format.file_compile.FileInfo attribute), [1] pct_exceed_ppfd (micromet.qaqc.netrad_limits.WindowComposite attribute), [1] pct_exceed_sw (micromet.qaqc.netrad_limits.WindowComposite attribute), [1] Pipeline (class in micromet.pipeline) PipelineConfig (class in micromet.pipeline) plot_flux_vs_ustar() (in module micromet.report.eddy_plots) plot_gaps() (in module micromet.report.tools) plot_interactive_regression_with_color() (in module micromet.report.eddy_plots) plot_linear_regression_with_color() (in module micromet.report.eddy_plots) plot_sectional_lags_plotly() (in module micromet.report.validate) plot_summary() (in module micromet.qaqc.netrad_limits) plot_timeseries_daterange() (in module micromet.report.graphs) plot_wind_rose_from_df() (in module micromet.report.eddy_plots) plotlystuff() (in module micromet.report.eddy_plots) polar_to_cartesian_dataframe() (in module micromet.report.tools) precip_bad_before (micromet.SiteCorrections attribute), [1] precip_correction_end (micromet.SiteCorrections attribute), [1] precip_correction_factor (micromet.SiteCorrections attribute), [1] prep_for_comparison() (in module micromet.report.validate) prep_parquet() (in module micromet.qaqc.data_cleaning)

prepare() (micromet.format.reformatter.Reformatter method) (micromet.Reformatter method), [1] prepend_header_in_place() (in module micromet.format.headers) (in module micromet.headers) preprocess() (micromet.format.reformatter.Reformatter method) (micromet.Reformatter method), [1] preprocessed_dir (micromet.WorkflowConfig attribute), [1] preprocessed_path (micromet.WorkflowConfig property), [1] process() (micromet.format.reformatter.Reformatter method) (micromet.Reformatter method), [1] process_and_match_columns() (in module micromet.format.transformers) (in module micromet.format.transformers.cleanup) process_by_interval() (in module micromet.format.transformers.timestamp_update) process_file() (in module micromet.format.headers) (in module micromet.headers) (micromet.pipeline.Pipeline method) process_station() (in module micromet.pipeline) (micromet.pipeline.Pipeline method) process_station_data() (micromet.station_data_pull.StationDataProcessor method), [1] (micromet.StationDataProcessor method), [1] processing_time (micromet.pipeline.ProcessingResult attribute), [1] (micromet.WorkflowResult attribute), [1] ProcessingResult (class in micromet.pipeline)

R

r2 (micromet.format.compare.FitResult attribute) rating() (in module micromet.format.transformers) (in module micromet.format.transformers.corrections) raw_data_root (micromet.WorkflowConfig attribute), [1] raw_file_compile() (micromet.AmerifluxDataProcessor method), [1] (micromet.reader.AmerifluxDataProcessor method) read_colnames() (in module micromet.format.headers) (in module micromet.headers) read_site_config() (in module micromet.utils) reader (micromet.pipeline.Pipeline attribute) Reformatter (class in micromet), [1] (class in micromet.format.reformatter) remove_existing_records() (micromet.station_data_pull.StationDataProcessor static method), [1] (micromet.StationDataProcessor static method), [1]

rename_columns() (in module micromet.format.transformers) (in module micromet.format.transformers.columns) reports (micromet.pipeline.ProcessingResult attribute), [1] (micromet.WorkflowResult attribute), [1] resample_alternating_frequency_with_other() (in module micromet.format.transformers.timestamp_update) resample_single_frequency_switch() (in module micromet.format.transformers.timestamp_update) resample_timestamps() (in module micromet.format.transformers) (in module micromet.format.transformers.timestamps) residuals (micromet.format.compare.FitResult attribute) review_lags() (in module micromet.report.validate) run() (micromet.WorkflowRunner method), [1] run_soil_data_pipeline() (in module micromet.report.fix_g_values) run_workflow() (in module micromet), [1]

S

save_intermediate (micromet.pipeline.PipelineConfig attribute), [1] save_plot() (in module micromet.report.graphs) scale_and_convert() (in module micromet.format.transformers) (in module micromet.format.transformers.corrections) scan() (in module micromet.format.headers) (in module micromet.headers) scatterplot_instrument_comparison() (in module micromet.report.graphs) set_number_types() (in module micromet.format.transformers) (in module micromet.format.transformers.cleanup) set_range_to_nan() (in module micromet.qaqc.data_cleaning) sg_correction_end (micromet.SiteCorrections attribute), [1] sg_correction_factor (micromet.SiteCorrections attribute), [1] sg_correction_vars (micromet.SiteCorrections attribute), [1] signal_strength_threshold (micromet.SiteCorrections attribute), [1] site_id (micromet.pipeline.ProcessingResult attribute), [1] site_lat (micromet.format.reformatter.Reformatter attribute) (micromet.Reformatter attribute), [1] site_lon (micromet.format.reformatter.Reformatter attribute) (micromet.Reformatter attribute), [1] site_utc_offset (micromet.format.reformatter.Reformatter attribute) (micromet.Reformatter attribute), [1] SiteCorrections (class in micromet), [1] size (micromet.format.file_compile.FileInfo attribute), [1] skip_rows (micromet.AmerifluxDataProcessor attribute), [1] (micromet.reader.AmerifluxDataProcessor attribute) sniff_delimiter() (in module micromet.format.headers) (in module micromet.headers) soilvue_bad_ec_threshold (micromet.SiteCorrections attribute), [1] soilvue_depths_cm (micromet.WorkflowConfig attribute), [1]

soilvue_g_calculation (micromet.WorkflowConfig attribute), [1] solar_declination() (in module micromet.qaqc.netrad_limits) solar_elevation() (in module micromet.qaqc.netrad_limits) ssitc_scale() (in module micromet.format.transformers) (in module micromet.format.transformers.corrections) start (micromet.DateRangeDrop attribute), [1] (micromet.FlagWindow attribute), [1] station (micromet.WorkflowConfig attribute), [1] (micromet.WorkflowResult attribute), [1] StationDataDownloader (class in micromet), [1] (class in micromet.station_data_pull), [1] StationDataProcessor (class in micromet), [1] (class in micromet.station_data_pull), [1] step1_compile_and_preprocess() (micromet.WorkflowRunner method), [1] step2_create_raw_data() (micromet.WorkflowRunner method), [1] step3_qc_data() (micromet.WorkflowRunner method), [1] step4_export_ameriflux() (micromet.WorkflowRunner method), [1] step_minutes (micromet.qaqc.netrad_limits.WindowComposite attribute), [1] steps (micromet.WorkflowConfig attribute), [1] steps_completed (micromet.WorkflowResult attribute), [1] steps_per_day (micromet.qaqc.netrad_limits.WindowComposite attribute), [1] student_resid_plot() (in module micromet.report.eddy_plots) subset_interval() (in module micromet.format.transformers.interval_updates) subset_year() (in module micromet.report.tools) success (micromet.pipeline.ProcessingResult attribute), [1] (micromet.WorkflowResult attribute), [1] summarize_gaps() (in module micromet.report.gap_summary) summary() (micromet.pipeline.ProcessingResult method) (micromet.WorkflowResult method), [1] sw_in_pot_noaa() (in module micromet.qaqc.netrad_limits)

T

tau_fixer() (in module micromet.format.transformers) (in module micromet.format.transformers.corrections) timestamp_issues (micromet.pipeline.ProcessingResult attribute), [1] timestamp_reset() (in module micromet.format.transformers) (in module micromet.format.transformers.timestamps)

to_dataframe() (micromet.AmerifluxDataProcessor method), [1] (micromet.reader.AmerifluxDataProcessor method) to_dict() (micromet.pipeline.PipelineConfig method) (micromet.pipeline.ProcessingResult method) train_linear_regression_model() (in module micromet.qaqc.data_cleaning)

U

update_albedo() (in module micromet.report.recalculate_albedo)

V

validate_flags() (in module micromet.report.validate) validate_timeseries_data() (in module micromet.report.validate) validate_timestamp_consistency() (in module micromet.report.validate)

var_limits_csv (micromet.pipeline.PipelineConfig attribute), [1] varlimits (micromet.format.reformatter.Reformatter attribute) (micromet.Reformatter attribute), [1]

W

wind_direction_change_date (micromet.SiteCorrections attribute), [1] wind_direction_offset (micromet.SiteCorrections attribute), [1] wind_flag_bad_range (micromet.SiteCorrections attribute), [1] wind_flag_marginal_ranges (micromet.SiteCorrections attribute), [1]

window_id (micromet.qaqc.netrad_limits.WindowComposite attribute), [1] WindowComposite (class in micromet.qaqc.netrad_limits) WorkflowConfig (class in micromet), [1] WorkflowResult (class in micromet), [1] WorkflowRunner (class in micromet), [1]

Y

y_hat (micromet.format.compare.FitResult attribute)

year (micromet.qaqc.netrad_limits.WindowComposite attribute), [1]